She is leading the organisation of the workshops at the CBW and at the MiCM. Some of the tools he developed in the past include MetaboAnalyst for statistical analysis of metabolomics data, MSEA for metabolite set enrichment analysis, MetPA for metabolic pathway analysis, ROCCET for ROC curve based biomarker analysis, and NetworkAnalyst for data integration and network analysis. He is interested in encouraging research groups who might be new to bioinformatics and computational methods to adopt open and reproducible approaches to their work. Bioinformatics is the managing of large amounts of biological information generated from research using advanced computational methods/programs. Dr. Wishart is currently working in four areas: 1) Protein folding and protein structure prediction; 2) Automated genome/proteome annotation; 3) Developing software tools to facilitate metabolomics and cheminformatics; and 4) Developing software tools to improve NMR-based protein structure determination. I completed my PhD at Simon Fraser University in the laboratory of Dr. Fiona Brinkman and a post-doctoral fellowship in the laboratory of Dr. Claire Fraser-Liggett at the Institute for Genome Sciences, University of Maryland School of Medicine. Centre for the Analysis of Genome Evolution & Function, High throughput technology platforms and computational resources, University Health Network, University of Toronto, Institute of Biomaterials and Biomedical Engineering, Department of Chemical Engineering and Applied Chemistry, Department of Ecology and Evolutionary Biology, Department of Laboratory Medicine and Pathobiology, Computational Biology Group, Department of Computer Science, Computational Biology Track, Department of Molecular Genetics, Research Institute of the Hospital for Sick Children. In her work, Lauren is focused on developing and applying statistical machine learning methods primarily in the area of data integration for improved translational discovery in the fields of genetics and genome biology. 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He has led the development of key online informatics resources for cancer precision medicine such DGIdb, DoCM, CIViC and more. Research: Bioinformatics, Cancer Genomics. Dr. Griffith’s research is focused on the development of genomics and bioinformatics methods as they apply to the study of cancer biology and medicine. Guelph offers three different graduate programs for you to find your best fit. It may be useful to use the cross-referenced lists for Research Areas, Research Organisms, and Departmental Affiliations on the Collaborative Graduate Program in Genome Biology and Bioinformatics website to identify specific people within the following Departments / Institutes / Centres. Program Objectives. The University of Toronto is home to one of the largest genomics, proteomics, systems biology and computational biology research communities in the world, all situated at the heart of the exciting cosmopolitan city of Toronto. Faculty of Information COVID-19 page: links and updates aimed specificially at our students, faculty and staff Contact us for more information about our programs Areas of Study Assistant Professor, Departments of Medical Biophysics and Computer Science, University of Toronto Faculty Affiliate, Vector Institute Michael Hoffman creates predictive computational models to understand interactions between genome, epigenome, and phenotype in human cancers. Faculty Videos; Events/Opportunities; You are here. She completed her undergraduate degree at Mercer University in 2016, where she earned a B.S. Today, the Department boasts a large faculty (over 50 members and She is also part of the Precision Medicine Pathway and Cancer Biology Pathway at WashU, which allows to better understand how she can translate genomics and informatics into the clinic more efficiently. University of Toronto 1990 Centres: Centre for the Analysis of Genome Evolution & Function. Graduate Programs in Bioinformatics. statistics, bioinformatics, -omics, network biology, Francis was one of the co-founders of the CBW in 1998. Master’s in Bioinformatics, MSc and PhD at Guelph. Check out detailed reviews for programs, faculty, campus and more. Previously, she worked on characterizing the gene signatures of different types of leukemias using a murine model. She is currently an MSc student in Dr. Anna Goldenberg’s lab. Francis continues to be interested in computational biology and genomics, and the integration of all data types to help our understanding of biology. Bioinformatics is an interdisciplinary science that combines, Biology, Computer Science, Statistics, Mathematics, and Chemistry. Degree(s): Honours Bachelor of Science. bioinformatics, statistics, metabolomics, transcriptomics, network biology. The Department was founded in 1907-08 and has a proud tradition of excellence in research and in teaching. The Department of Biochemistry at the University of Toronto is a modern, research-intensive enterprise within the Faculty of Medicine. Currently, he manages software and analysis pipeline development on a wide range of next‐generation sequencing platforms technologies as well as taking part in national and international projects studying cancer genomics, genome assembly and transcriptomics at the McGill University and Genome Quebec Innovation Centre. Further developed the Enrichment Map Pipeline including development of additional Apps to help summarize and analyze resulting Enrichment Maps, including PostAnalysis, WordCloud, and AutoAnnotate App. Veronique is currently a bioinformatician applying pathway and networks analyses to highthrouput genomics data for OICR cancer stem cell program. He has worked on developing evolution models of genomics large repeats, modeling risk of developing the Coeliac disease based on genetic and familial information, and modeling gene-gene interactions and foeto-maternal interactions in the susceptibility to childhood leukemia. University of Toronto professors honoured with top research awards from Natural Sciences and Engineering Research Council of Canada Our Truth Issue arrives as the world struggles to adapt to life during a pandemic – a time when the importance of good, timely, honest information has perhaps never been as starkly apparent. Lauren has an MSc in Biostatistics from the University of Toronto and has previously worked as a Biostatitician for two pediatric psychiatric genetics labs at SickKids. Beijing (CN) $75,000 - $200,000 per year, depending on qualifications, + additional benefits (housing, childcare) Center for Quantitative Biology, Peking University Mathieu also organizes international genomics workshops. I joined BCCDC Public Health Microbiology & Reference Laboratory in September 2011 as the lead bioinformatician. These University of Toronto departments and affiliated institutes have some activities in bioinformatics, and genome-scale and computational biology. Bioinformatician and data analyst in the Bader lab applying pathway and data analysis to varied data types. Bioinformatics. Genomics, Bioinformatics, Next-Generation sequencing, Cancer. A particular focus of his work is in the translation of genomics data from whole genome, exome and transcriptome sequencing into clinically actionable observations and personalized cancer therapies. Read a brief history of the department. St. George Campus, Faculty of Arts & Science. His research interests are in comparative and functional genomics with a special emphasis on applications of next-generation sequencing technologies. JavaScript needs to be enabled to view site content. Epigenomics; functional genomics; machine learning; dynamic Bayesian networks; chromatin; graphical models; ChIP-seq; DNase-seq; cancer. Program Information. He has led the development of key online informatics resources such as DGIdb, CIViC, GenVisR and more. My goal is to apply microbial genomics and bioinformatics in public health setting to improve health care. Open Data, Open Source, Open Access and Open Courseware. Looking for something at the University of Toronto? program is a 3-semester course based master’s that was designed for students with little to no formal background in programming, yet provide you with the skills to analyze datasets and develop new bioinformatics approaches. ... Return to The University of Toronto Mississauga site. Dr. Griffith’s research is focused on the development of personalized medicine strategies for cancer using genomic technologies. Assistant Professor, Department of Computer Science, University of TorontoDr. Currently, my research focus on improving methodologies for conducting infectious disease surveillance and outbreak investigations by using next-generation sequencing technology and developing robust bioinformatics analysis platform. The following is a partial list of University of Toronto faculty, including current, former, emeritus, and deceased faculty, and administrators at University of Toronto.. To avoid redundancy, alumni who hold or have held faculty positions in the University of Toronto are placed on the list of alumni, and do not appear on this list of faculty. Dr. Bader develops biological network analysis and pathway information resources. Providing data provenance and openness of code, data and literature is essential to doing science. in Biochemistry and Molecular Biology. Course instructors are either core faculty members or status-appointed faculty who work as biostatisticians at University of Toronto-affiliated research centres, such as the Hospital for Sick Children and Princess Margaret Cancer Centre. For more information about applying for our workshops, please contact us [email protected] Data visualization, Software infrastructure, Data collection and archival, Epigenomics. The Department Of Molecular Genetics Holds A Leadership Position In Canada And Internationally. Mathieu Bourgey is the manager of the Research and Development team at the Montreal node of the Canadian Centre for Computational Genomics. She is currently an MSc student in Dr. Anna Goldenberg’s lab. Developed enrichment Map App for Cytoscape, an App to visually translate functional enrichment results from popular enrichment tools GSEA. A variety of university of toronto bioinformatics faculty, metabolomics, microarray and next generation sequencing ( )! 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